Jamalkandi SA, Masoudi-Nejad A. Reconstruction of Arabidopsis thaliana fully integrated small RNA pathway. Functional & integrative genomics. 2009 Nov 1;9(4):419.
Wang E, Zaman N, Mcgee S, Milanese JS, Masoudi-Nejad A, O’Connor-McCourt M. Predictive genomics: a cancer hallmark network framework for predicting tumor clinical phenotypes using genome sequencing data. InSeminars in cancer biology 2015 Feb 28 (Vol. 30, pp. 4-12). Academic Press.
Kashani ZR, Ahrabian H, Elahi E, Nowzari-Dalini A, Ansari ES, Asadi S, Mohammadi S, Schreiber F, Masoudi-Nejad A. Kavosh: a new algorithm for finding network motifs. BMC bioinformatics. 2009 Oct 4;10(1):318.
Masoudi-Nejad A, Tonomura K, Kawashima S, Moriya Y, Suzuki M, Itoh M, Kanehisa M, Endo T, Goto S. EGassembler: online bioinformatics service for large-scale processing, clustering and assembling ESTs and genomic DNA fragments. Nucleic acids research. 2006 Jul 1;34(suppl_2):W459-62.