Joe Pitt-Francis

Research Assistant/Associate Director/Departmental
Dpartment of Computer Science
University of Oxford
United Kingdom

Professor Mathematics
Biography

  Joe Pitt-Francisis a mathematician. He studied mathematics at Queen Mary and Westfield College from 1987, and then came to the Mathematical Institute in Oxford to study for a DPhil. in 1990. From 1994 to 1996 he was employed by the University of Bath to work on a large research project called Development of Modelling Tools for the Forging Industry. Since the beginning of 1997, Joe Pitt-Fravcisis have been back in Oxford. He was initially employed as a research officer on the grant Manufacturing automation of large scale assemblies. He worked in the Computing Laboratory (now Department of Computer Science) and he was supervised by Stephen Cameron. From October 1999 to June 2002 he was a Departmental Lecturer in the Computing Laboratory (now Department of Computer Science) . From Summer 2002 to Summer 2006 he was employed by the Oxford Supercomputing Centre as Scientific Computing Advisor. Since Summer 2006 he have been employed full time as a researcher within the Computational Biology group.

Research Intrest

  Chaste (Open source software for Computational Biology), Parallel and high performance computing, Cardiac modelling, Computational geometry and finite element meshes, Software development.

List of Publications
Gavaghan DJ. Chaste: an open source C++ library for computational physiology and biology.
Bernabeu MO, Southern J, Wilson N, Strazdins P, Cooper J, Pitt-Francis J. Chaste: a case study of parallelisation of an open source finite-element solver with applications to computational cardiac electrophysiology simulation. The International Journal of High Performance Computing Applications. 2014 Feb;28(1):13-32.
Osborne JM, Bernabeu MO, Bruna M, Calderhead B, Cooper J, Dalchau N, Dunn SJ, Fletcher AG, Freeman R, Groen D, Knapp B. Ten simple rules for effective computational research. PLoS computational biology. 2014 Mar 27;10(3):e1003506.
Walmsley J, Mirams GR, Pitt-Francis J, Rodriguez B, Burrage K. Application of stochastic phenomenological modelling to cell-to-cell and beat-to-beat electrophysiological variability in cardiac tissue. Journal of theoretical biology. 2015 Jan 21;365:325-36.