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Abhishek Mitra

research associate
Bioinformatics
Oncology Institute of Southern Switzerland
Switzerland

Academician Bioinformatics and Systems Biology
Biography

He is bioinformatician in the Carbone group working on ChIP sequencing data analysis with the aim to decipher the network of genes and miRNAs directly affected by the ETS transcription factors. He earned his PhD at the University of California, Riverside, and was postdoc at the University of Texas, Medical Branch. In his free time he builds his own hardware to crunch bitcoins

Research Intrest

Bioinformatics and Statistical Methods, Next Generation Sequencing Data Analysis Strings, Regex, Algorithms and Large Scale Data Processing CPU, GPU, HPC, Cloud Computing and Linux, Reconfigurable Computing with FPGAs, Flash Memories and SSDs, Wireless and Sensors, Embedded Systems, Sample Research Statement from year 2008

List of Publications
Mitra A, Skrzypczak M, Ginalski K, Rowicka M. Strategies for achieving high sequencing accuracy for low diversity samples and avoiding sample bleeding using illumina platform. PloS one. 2015 Apr 10;10(4):e0120520.
Mitra A, Vieira M, Bakalov P, Najjar W, Tsotras V. Boosting XML filtering with a scalable FPGA-based architecture. arXiv preprint arXiv:0909.1781. 2009 Sep 9.
Mitra A, Najjar W, Bhuyan L. Compiling pcre to fpga for accelerating snort ids. InProceedings of the 3rd ACM/IEEE Symposium on Architecture for networking and communications systems 2007 Dec 3 (pp. 127-136). ACM.

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